Chapter 2 Bioinformatics Databases

Single Cell Databases
Name Description Link
descartes Single cell atlas https://descartes.brotmanbaty.org/
PanglaoDB Single cell RNA sequencing experiments from mouse and human https://panglaodb.se/
CancerSEA Functional states of cancer cells at single-cell resolution
Human Cell Atlas Reference maps of all human cells https://www.humancellatlas.org/
Mouse Cell Atlas Reference maps of mouse cells http://bis.zju.edu.cn/MCA/
DropViz Exploring the Mouse Brain through Single Cell Expression Profiles http://dropviz.org/
Single-Cell Signature Explorer Single-Cell Signature Explorer is a package of four softwares dedicated to high throughput signature exploration in single-cell RNAseq analysis. https://sites.google.com/site/fredsoftwares/products/single-cell-signature-explorer
RNA Seq Databases
Name Description Link
The Human Protein Atals Maps all the human proteins in cells, tissues and organs using an integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics and systems biology https://www.proteinatlas.org/

Table : RNA Seq Tutorials

Table: Single Cell Seq Tutorials

Table: RNA seq Downstram analysis tutorials